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Sung-Yoon Ahn, Mira Kim, Hye-Won Jeong, Wonsuck Yoon, Iel-Soo Bang and Sang-Woong Lee
Technological advancements have shifted human living and working environments from outdoor to indoor. Although indoor spaces offer protection from unfavorable weather conditions, they also present new health challenges. Stale, humid, and warm indoor air ...
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Mihaly Mezei
Recent work showed that there is a significant difference between the statistics of amino acid triplets and quadruplets in sequences of folded proteins and randomly generated sequences. These statistics were used to assign a score to each sequence and ma...
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Roman Zoun, Kay Schallert, David Broneske, Ivayla Trifonova, Xiao Chen, Robert Heyer, Dirk Benndorf and Gunter Saake
Mass spectrometers enable identifying proteins in biological samples leading to biomarkers for biological process parameters and diseases. However, bioinformatic evaluation of the mass spectrometer data needs a standardized workflow and system that store...
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Damianos P. Melidis and Wolfgang Nejdl
Predicting biological properties of unseen proteins is shown to be improved by the use of protein sequence embeddings. However, these sequence embeddings have the caveat that biological metadata do not exist for each amino acid, in order to measure the q...
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Kanoknate M. Supasri, Manoj Kumar, Anna Segecová, Janice I. McCauley, Andrei Herdean, Matthew P. Padula, Tim O?Meara and Peter J. Ralph
Peridinin-Chlorophyll a-Proteins (PCP) are the major light harvesting proteins in photosynthetic dinoflagellates. PCP shows great variation in protein length, pigment ratio, sequence, and spectroscopic properties. PCP conjugates (PerCP) are widely used a...
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Ruitao Wu, Xiang Zhang, Runtao Wang and Haipeng Wang
Protein and peptide identification based on tandem mass spectrometry is a pillar technology in proteomics research. In recent years, increasing numbers of researchers have utilized deep learning to tackle challenges in proteomics. For example, catalyzed ...
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Xingming Zeng, Haiyuan Liu and Hao He
Prediction of intrinsic disordered proteins is a hot area in the field of bio-information. Due to the high cost of evaluating the disordered regions of protein sequences using experimental methods, we used a low-complexity prediction scheme. Sequence com...
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Mohammed Othman Aljahdali, Mohammad Habibur Rahman Molla and Wessam Mansour Filfilan
Tilapia (Oreochromis spp.) have significant potential for aquaculture production around the world. There is an increasing demand among tilapia producers for strains with higher yields and for fish that can survive in highly saline water. Novel strains an...
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Ayad Rodhan Abbas, Bashar Saadoon Mahdi and Osamah Younus Fadhil
Anticancer peptides (ACPs) are short protein sequences; they perform functions like some hormones and enzymes inside the body. The role of any protein or peptide is related to its structure and the sequence of amino acids that make up it. There are 20 ty...
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Mu Zhang, Fengqiang Wan and Taigang Liu
The identification of druggable proteins has always been the core of drug development. Traditional structure-based identification methods are time-consuming and costly. As a result, more and more researchers have shifted their attention to sequence-based...
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Laura Orellana
At the very deepest molecular level, the mechanisms of life depend on the operation of proteins, the so-called ?workhorses? of the cell. Proteins are nanoscale machines that transform energy into useful cellular work, such as ion or nutrient transport, i...
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Lin Zhang, Haiyuan Liu and Hao He
We used fuzzy entropy as a feature to optimize the intrinsically disordered protein prediction scheme. The optimization scheme requires computing only five features for each residue of a protein sequence, that is, the Shannon entropy, topological entropy...
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Manon Ruffini, Jelena Vucinic, Simon de Givry, George Katsirelos, Sophie Barbe and Thomas Schiex
Proteins are the main active molecules of life. Although natural proteins play many roles, as enzymes or antibodies for example, there is a need to go beyond the repertoire of natural proteins to produce engineered proteins that precisely meet applicatio...
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Decha Songtoasesakul, Wanchana Aesomnuk, Sarinthip Pannak, Jonaliza Lanceras Siangliw, Meechai Siangliw, Theerayut Toojinda, Samart Wanchana and Siwaret Arikit
Rice is a staple food crop that plays a pivotal role in global food security, feeding more than half of the world?s population. Soil salinity is one of the most important global problems affecting rice productivity. Salt stress at the seedling stage inhi...
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Chieh Lun Liu, Erica A. Dasi, Aaron M. Watson, Allen R. Place and Rosemary Jagus
The present study investigates the response of the marine fish cobia, Rachycentron canadum, to stressors as measured by phosphorylation of the a-subunit of the translational initiation factor, eIF2. eIF2a is the target of phosphorylation by a family of k...
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Ruijuan Hao, Chuchu Mo, Linda Adzigbli, Chuangye Yang, Yuewen Deng and Qingheng Wang
Fibroblast growth factor 18 (FGF18) plays an important functional role in skeletal growth and development. The FGF18 gene was characterized in pearl oyster Pinctada fucata martensii (PmFGF18) with the full-length sequence containing an open reading frame...
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Xuejiao Huang, Jiupai Ni, Chong Yang, Mi Feng, Zhenlun Li and Deti Xie
In this study, we isolated a strain of photosynthetic bacteria from landscape water located in Southwest University, Chongqing, China, and named it Smobiisys501. Smobiisys501 was Rhodopseudomonas sp. according to its cell morphological properties and abs...
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Natascha M. Thevasagayam, Prakki S.R. Sridatta, Junhui Jiang, Amy Tong, Jolly M. Saju, Purushothaman Kathiresan, Hsiao Yuen Kwan, Si Yan Ngoh, Woei Chang Liew, Inna S. Kuznetsova, Xueyan Shen, Si Lok, Shubha Vij and László Orbán
The Asian seabass (or barramundi; Lates calcarifer) is a marine teleost and a popular food fish in Southeast Asia and Australia. To date, comprehensive genome and transcriptome sequence information has not been available for this species in public reposi...
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Qian Zhang, Yanrong Li, Kai Liao, Deshui Chen, Yangyang Qiu, Xiaojun Yan and Jilin Xu
The mammalian target of rapamycin (mTOR) has been shown to play a central role in regulating cell growth and metabolism. However, little is known about the function of mTOR in nutrient metabolism in bivalve mollusks. In this study, the role of mTOR in th...
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Bhawna Mewara, Gunjan Sahni, Soniya Lalwani and Rajesh Kumar
Protein?protein interactions (PPIs) are involved in an extensive variety of biological procedures, including cell-to-cell interactions, and metabolic and developmental control. PPIs are becoming one of the most important aims of system biology. PPIs act ...
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