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David Fernández-Baca and Lei Liu
We study two problems in computational phylogenetics. The first is tree compatibility. The input is a collection ??
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of phylogenetic trees over different partially-overlapping sets of species. The goal is to find a single phylogenetic tree that display...
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Simone Ciccolella, Gianluca Della Vedova, Vladimir Filipovic and Mauricio Soto Gomez
Being able to infer the clonal evolution and progression of cancer makes it possible to devise targeted therapies to treat the disease. As discussed in several studies, understanding the history of accumulation and the evolution of mutations during cance...
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Jacques Demongeot, Joël Gardes, Christophe Maldivi, Denis Boisset, Kenza Boufama and Imène Touzouti
Background: In present genomes, current relics of a circular RNA appear which could have played a central role as a primitive catalyst of the peptide genesis. Methods: Using a proximity measure to this circular RNA and the distance, a new unsupervised cl...
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Hyun Jung Kim, Zhun Li, Nam Seon Kang, Haifeng Gu, Daekyung Kim, Min Ho Seo, Sang Deuk Lee, Suk Min Yun, Seok-Jin Oh and Hyeon Ho Shin
The dinoflagellate genus Scrippsiella is a common member of phytoplankton and their cysts are also frequently reported in coastal sediments worldwide. However, the diversity of Scrippsiella in Korean waters has not been fully investigated. Here, several ...
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Jesús Montiel, Citlali Fonseca-García and Carmen Quinto
The mutualistic interaction between gram-negative soil bacteria and the roots of legumes leads to the establishment of nodules, where atmospheric nitrogen is fixed. Nodulation is a multistep process with numerous essential players. Among these are reacti...
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Hassan S. Al-Zahrani, Tarek A. A. Moussa, Hameed Alsamadany, Rehab M. Hafez and Michael P. Fuller
Tomato cv. super strain B was widely cultivated in Saudi Arabia under drought stress. Illumina Hiseq-2000 was used to create the transcriptional profile of tomato cultivar super strain B. A total of 98,069 contigs were gathered, with an average length of...
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Samuel R. Schrader and Eren Gultepe
The evaluation of similarities between natural languages often relies on prior knowledge of the languages being studied. We describe three methods for building phylogenetic trees and clustering languages without the use of language-specific information. ...
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Da-In Kim, Sook-Jin Jang and Taewon Kim
Ghost crabs, as a species of the Ocypode within the subfamily Ocypodinae, are distributed in the upper intertidal zone worldwide and are ecologically remarkable. They play an important role in the energy circulation in the intertidal zone and are used as...
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Mostafa Nafaa, Samah Mohamed Rizk, Tahany Abdel-Ghafar Ahmed Aly, Mohamed Abdel-Salam Rashed, Diaa Abd El-Moneim, Abir Ben Bacha, Mona Alonazi and Mahmoud Magdy
Soil fungi are a wide range of microorganisms that play an essential role in enhancing the available nutrients in the soil for plants. In the current study, to study the fungal association with newly reclaimed land in Egypt, 22 composite soil samples wer...
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Madalina-Alexandra Davidescu, Claudia Pânzaru, Alexandru Usturoi, Razvan-Mihail Radu-Rusu and ?teofil Creanga
In the context of the general phenomenon of diminishing genetic diversity, especially in cattle, the conservation of endangered species plays a primary role. The disappearance of some animal populations can irreparably affect the biodiversity of genetic ...
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Giusy D?Attoma, Angelantonio Minafra, Pasquale Saldarelli and Massimiliano Morelli
Wisteria vein mosaic virus (WVMV) is a member of the genus Potyvirus, found to be associated with the Wisteria mosaic disease (WMD). In 2022, severe symptoms resembling WMD were observed on the foliage of a Chinese wisteria (Wisteria sinensis) tree growi...
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Jeonghoon Han, Jong Guk Kim, O-Nam Kwon, Jordan Jun Chul Park, Kyun-Woo Lee and Young-Ung Choi
The geoduck clam is a high-value species in South Korea. However, the molecular and morphological characteristics of geoduck clams from the southern coast of South Korea remain unexamined. The accurate identification of native geoduck clams is crucial fo...
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Xing Huang, Bochao Xu, Shibei Tan, Yanlei Huang, Jingen Xi, Xu Qin, Tao Chen, Helong Chen, Xiaohan Yang and Kexian Yi
Agave angustifolia is an important crassulacean acid metabolism plant species, with wide applications in beverage and sisal fiber production. In this study, we carried out a transcriptome analysis of A. angustifolia leaves, generating a total of 58,482,4...
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Jeonghoon Han, Han-Jun Kim, Sung-Yong Oh and Young-Ung Choi
In this study, we investigated the reproductive pattern of the commercially and ecologically important species, Ostrea denelamellosa, to inform stock management strategies in South Korea. Prior to the reproduction experiment, the complete mitochondrial (...
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Binqi Li, Muhammad Moaaz Ali, Tianxin Guo, Shariq Mahmood Alam, Shaista Gull, Junaid Iftikhar, Ahmed Fathy Yousef, Walid F. A. Mosa and Faxing Chen
SWEETs (sugars will eventually be exported transporters) have various physiological and biochemical roles in plant growth, including pollen development, seed nourishment, nectar secretion, and longer-distance sugar transportation. The SWEET genes were id...
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Artem M. Prokofiev, Olga R. Emelyanova, Alexei M. Orlov and Svetlana Y. Orlova
A new species, Diaphus balanovi, is described based on 35 specimens collected over the Emperor Seamount Chain in the north-western Pacific Ocean. It belongs to the D. fulgens species complex and is most similar to D. kuroshio both morphologically and gen...
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Minhyuk Park, Paul Zaharias and Tandy Warnow
The estimation of phylogenetic trees for individual genes or multi-locus datasets is a basic part of considerable biological research. In order to enable large trees to be computed, Disjoint Tree Mergers (DTMs) have been developed; these methods operate ...
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Brona Brejová and Rastislav Královic
In the reconciliation problem, we are given two phylogenetic trees. A species tree represents the evolutionary history of a group of species, and a gene tree represents the history of a family of related genes within these species. A reconciliation maps ...
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Sanna Olsson,Delphine Grivet,Jeronimo Cid-Vian
Pág. e016
Aim of study: The identification of material of forest tree species using genetic markers was carried out. Two promising chloroplast barcode markers, matK and ycf1, were tested for species identification and reconstruction of phylogenetic relationships i...
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Ana Belén Jódar-Pérez, Marc Terradas-Fernández, Federico López-Moya, Leticia Asensio-Berbegal and Luis Vicente López-Llorca
Cystoseira sensu lato (sl) are three genera widely recognized as bioindicators for their restricted habitat in a sub-coastal zone with low tolerance to pollution. Their ecological, morphological and taxonomic features are still little known due to their ...
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